Hydropower reservoirs are artificial water systems and comprise a small proportion of the Earth’s continental territory. However, they play an important role in the aquatic biogeochemistry and may affect the environment negatively. Since the 90s, as a result of research on organic matter decay in manmade flooded areas, some reports have associated greenhouse gas emissions with dam construction. Pioneering work carried out in the early period challenged the view that hydroelectric plants generate completely clean energy.