Aquaculture is the fastest growing food sector in the world and now accounts for more than half of the fish consumed globally. However, the sector in Africa remains in its infancy, with the notable exception of Egypt, one of the world’s largest producers. This paper provides a thorough analysis of the sector in the selected countries of Egypt, Kenya and Nigeria to help identify investment and policy priorities that can sustainably advance aquaculture across Africa to boost income and employment, rural development and food security. The analysis focuses on nine themes to ensure a comprehensive overview of the sector and to better understand the relative strengths and weaknesses in each country: sector trends, national policy frameworks, government institutions, natural resources to support aquaculture, sector-specific innovation, feed and seed, market access, public-private partnerships, and sectoral impacts.